Irene Julca

Affiliations

School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.

ORCID: http://orcid.org/0000-0002-1332-7948

Publications (17)

Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants.

Nature plants

Avec: Irene Julca , Camilla Ferrari , María Flores-Tornero , Sebastian Proost , Ann-Cathrin Lindner , Dieter Hackenberg , Lenka Steinbachová , Christos Michaelidis , Sónia Gomes Pereira , Chandra Shekhar Misra , Tomokazu Kawashima , Michael Borg , Frédéric Berger , Jacob Goldberg , Mark Johnson , David Honys , David Twell , Stefanie Sprunck , Thomas Dresselhaus , Jörg D Becker , Marek Mutwil

Comparative spatial proteomics of Plasmodium-infected erythrocytes.

Cell reports

Avec: Anthony Siau , Jing Wen Ang , Omar Sheriff , Regina Hoo , Han Ping Loh , Donald Tay , Ximei Huang , Xue Yan Yam , Soak Kuan Lai , Wei Meng , Irene Julca , Sze Siu Kwan , Marek Mutwil , Peter R Preiser

Redesigning plant specialized metabolism with supervised machine learning using publicly available reactome data.

Computational and structural biotechnology journal

Avec: Peng Ken Lim , Irene Julca , Marek Mutwil

A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits.

Nature genetics

Avec: Guangwei Zhao , Qun Lian , Zhonghua Zhang , Qiushi Fu , Yuhua He , Shuangwu Ma , Valentino Ruggieri , Antonio J Monforte , Pingyong Wang , Irene Julca , Huaisong Wang , Junpu Liu , Yong Xu , Runze Wang , Jiabing Ji , Zhihong Xu , Weihu Kong , Yang Zhong , Jianli Shang , Lara Pereira , Jason Argyris , Jian Zhang , Carlos Mayobre , Marta Pujol , Elad Oren , Diandian Ou , Jiming Wang , Dexi Sun , Shengjie Zhao , Yingchun Zhu , Na Li , Nurit Katzir , Amit Gur , Catherine Dogimont , Hanno Schaefer , Wei Fan , Abdelhafid Bendahmane , Zhangjun Fei , Michel Pitrat , Toni Gabaldón , Tao Lin , Jordi Garcia-Mas , Yongyang Xu , Sanwen Huang

Incidence and microbiological characteristics of neonatal late onset sepsis in a neonatal intensive care unit in Peru.

International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Avec: Cecilia Herbozo , Irene Julca , Fiorella Flores , Roger Hernandez , Jaime Zegarra

OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.

Nucleic acids research

Avec: Adrian M Altenhoff , Alex Warwick Vesztrocy , Charles Bernard , Clement-Marie Train , Alina Nicheperovich , Silvia Prieto Baños , Irene Julca , David Moi , Yannis Nevers , Sina Majidian , Christophe Dessimoz , Natasha M Glover

Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha.

Molecular biology and evolution

Avec: Irene Julca , Marina Marcet-Houben , Fernando Cruz , Carlos Vargas-Chavez , John Spencer Johnston , Jèssica Gómez-Garrido , Leonor Frias , André Corvelo , Damian Loska , Francisco Cámara , Marta Gut , Tyler Alioto , Amparo Latorre , Toni Gabaldón

Removing auto-activators from yeast-two-hybrid assays by conditional negative selection.

Scientific reports

Avec: Devendra Shivhare , Magdalena Musialak-Lange , Irene Julca , Pawel Gluza , Marek Mutwil

Phylogenomic Analysis of the Plastid Genome of the Peruvian Purple Maize

Plants (Basel, Switzerland)

Avec: Juan D Montenegro , Irene Julca , Lenin D Chumbe-Nolasco , Lila M Rodríguez-Pérez , Ricardo Sevilla Panizo , Alicia Medina-Hoyos , Dina L Gutiérrez-Reynoso , Juan Carlos Guerrero-Abad , Carlos A Amasifuen Guerra , Aura L García-Serquén

Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites.

Journal of integrative plant biology

Avec: Irene Julca , Daniela Mutwil-Anderwald , Vaishnervi Manoj , Zahra Khan , Soak Kuan Lai , Lay K Yang , Ing T Beh , Jerzy Dziekan , Yoon P Lim , Shen K Lim , Yee W Low , Yuen I Lam , Seth Tjia , Yuguang Mu , Qiao W Tan , Przemyslaw Nuc , Le M Choo , Gillian Khew , Loo Shining , Antony Kam , James P Tam , Zbynek Bozdech , Maximilian Schmidt , Bjoern Usadel , Yoganathan Kanagasundaram , Saleh Alseekh , Alisdair Fernie , Hoi Y Li , Marek Mutwil

The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis.

eLife

Avec: Rion Brattig-Correia , Joana M Almeida , Margot Julia Wyrwoll , Irene Julca , Daniel Sobral , Chandra Shekhar Misra , Sara Di Persio , Leonardo Gastón Guilgur , Hans-Christian Schuppe , Neide Silva , Pedro Prudêncio , Ana Nóvoa , Ana S Leocádio , Joana Bom , Sandra Laurentino , Moises Mallo , Sabine Kliesch , Marek Mutwil , Luis M Rocha , Frank Tüttelmann , Jörg D Becker , Paulo Navarro-Costa

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence.

The Plant journal : for cell and molecular biology

Avec: Tyler Alioto , Konstantinos G Alexiou , Amélie Bardil , Fabio Barteri , Raúl Castanera , Fernando Cruz , Amit Dhingra , Henri Duval , Ángel Fernández I Martí , Leonor Frias , Beatriz Galán , José L García , Werner Howad , Jèssica Gómez-Garrido , Marta Gut , Irene Julca , Jordi Morata , Pere Puigdomènech , Paolo Ribeca , María J Rubio Cabetas , Anna Vlasova , Michelle Wirthensohn , Jordi Garcia-Mas , Toni Gabaldón , Josep M Casacuberta , Pere Arús

Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom.

Computational and structural biotechnology journal

Avec: Jolyn Jia Jia Lim , Jace Koh , Jia Rong Moo , Erielle Marie Fajardo Villanueva , Dhira Anindya Putri , Yuen Shan Lim , Wei Song Seetoh , Sriya Mulupuri , Janice Wan Zhen Ng , Nhi Le Uyen Nguyen , Rinta Reji , Herman Foo , Margaret Xuan Zhao , Tong Ling Chan , Edbert Edric Rodrigues , Ryanjit Singh Kairon , Ker Min Hee , Natasha Cassandra Chee , Ann Don Low , Zoe Hui Xin Chen , Shan Chun Lim , Vanessa Lunardi , Tuck Choy Fong , Cherlyn Xin'Er Chua , Kenny Ting Sween Koh , Irene Julca , Riccardo Delli-Ponti , Jonathan Wei Xiong Ng , Marek Mutwil

Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.).

BMC biology

Avec: Irene Julca , Marina Marcet-Houben , Fernando Cruz , Jèssica Gómez-Garrido , Brandon S Gaut , Concepción M Díez , Ivo G Gut , Tyler S Alioto , Pablo Vargas , Toni Gabaldón

Toward kingdom-wide analyses of gene expression.

Trends in plant science

Avec: Irene Julca , Qiao Wen Tan , Marek Mutwil

Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies.

BMC biology

Avec: Irene Julca , Pablo Vargas , Toni Gabaldón

PEO: Plant Expression Omnibus - a comparative transcriptomic database for 103 Archaeplastida.

The Plant journal : for cell and molecular biology

Avec: Eugene Koh , William Goh , Irene Julca , Erielle Villanueva , Marek Mutwil

Réseau de co-auteurs

Marek Mutwil 9 collaborations

Toni Gabaldón 5 collaborations

Fernando Cruz 3 collaborations

Jèssica Gómez-Garrido 3 collaborations

Chandra Shekhar Misra 2 collaborations

Jörg D Becker 2 collaborations

Soak Kuan Lai 2 collaborations

Jordi Garcia-Mas 2 collaborations

Marina Marcet-Houben 2 collaborations

Leonor Frias 2 collaborations

Marta Gut 2 collaborations

Tyler Alioto 2 collaborations

Pablo Vargas 2 collaborations

Camilla Ferrari 1 collaboration

María Flores-Tornero 1 collaboration

Sebastian Proost 1 collaboration

Ann-Cathrin Lindner 1 collaboration

Dieter Hackenberg 1 collaboration

Lenka Steinbachová 1 collaboration

Christos Michaelidis 1 collaboration

Sónia Gomes Pereira 1 collaboration

Tomokazu Kawashima 1 collaboration

Michael Borg 1 collaboration

Frédéric Berger 1 collaboration

Jacob Goldberg 1 collaboration

Mark Johnson 1 collaboration

David Honys 1 collaboration

David Twell 1 collaboration

Stefanie Sprunck 1 collaboration

Thomas Dresselhaus 1 collaboration

Anthony Siau 1 collaboration

Jing Wen Ang 1 collaboration

Omar Sheriff 1 collaboration

Regina Hoo 1 collaboration

Han Ping Loh 1 collaboration

Donald Tay 1 collaboration

Ximei Huang 1 collaboration

Xue Yan Yam 1 collaboration

Wei Meng 1 collaboration

Sze Siu Kwan 1 collaboration

Peter R Preiser 1 collaboration

Peng Ken Lim 1 collaboration

Guangwei Zhao 1 collaboration

Qun Lian 1 collaboration

Zhonghua Zhang 1 collaboration

Qiushi Fu 1 collaboration

Yuhua He 1 collaboration

Shuangwu Ma 1 collaboration

Valentino Ruggieri 1 collaboration

Antonio J Monforte 1 collaboration

Pingyong Wang 1 collaboration

Huaisong Wang 1 collaboration

Junpu Liu 1 collaboration

Yong Xu 1 collaboration

Runze Wang 1 collaboration

Jiabing Ji 1 collaboration

Zhihong Xu 1 collaboration

Weihu Kong 1 collaboration

Yang Zhong 1 collaboration

Jianli Shang 1 collaboration

Lara Pereira 1 collaboration

Jason Argyris 1 collaboration

Jian Zhang 1 collaboration

Carlos Mayobre 1 collaboration

Marta Pujol 1 collaboration

Elad Oren 1 collaboration

Diandian Ou 1 collaboration

Jiming Wang 1 collaboration

Dexi Sun 1 collaboration

Shengjie Zhao 1 collaboration

Yingchun Zhu 1 collaboration

Na Li 1 collaboration

Nurit Katzir 1 collaboration

Amit Gur 1 collaboration

Catherine Dogimont 1 collaboration

Hanno Schaefer 1 collaboration

Wei Fan 1 collaboration

Abdelhafid Bendahmane 1 collaboration

Zhangjun Fei 1 collaboration

Michel Pitrat 1 collaboration

Tao Lin 1 collaboration

Yongyang Xu 1 collaboration

Sanwen Huang 1 collaboration

Cecilia Herbozo 1 collaboration

Fiorella Flores 1 collaboration

Roger Hernandez 1 collaboration

Jaime Zegarra 1 collaboration

Adrian M Altenhoff 1 collaboration

Alex Warwick Vesztrocy 1 collaboration

Charles Bernard 1 collaboration

Clement-Marie Train 1 collaboration

Alina Nicheperovich 1 collaboration

Silvia Prieto Baños 1 collaboration

David Moi 1 collaboration

Yannis Nevers 1 collaboration

Sina Majidian 1 collaboration

Christophe Dessimoz 1 collaboration

Natasha M Glover 1 collaboration

Carlos Vargas-Chavez 1 collaboration

John Spencer Johnston 1 collaboration

André Corvelo 1 collaboration

Damian Loska 1 collaboration

Francisco Cámara 1 collaboration

Amparo Latorre 1 collaboration

Devendra Shivhare 1 collaboration

Magdalena Musialak-Lange 1 collaboration

Pawel Gluza 1 collaboration

Juan D Montenegro 1 collaboration

Lenin D Chumbe-Nolasco 1 collaboration

Lila M Rodríguez-Pérez 1 collaboration

Ricardo Sevilla Panizo 1 collaboration

Alicia Medina-Hoyos 1 collaboration

Dina L Gutiérrez-Reynoso 1 collaboration

Juan Carlos Guerrero-Abad 1 collaboration

Carlos A Amasifuen Guerra 1 collaboration

Aura L García-Serquén 1 collaboration

Daniela Mutwil-Anderwald 1 collaboration

Vaishnervi Manoj 1 collaboration

Zahra Khan 1 collaboration

Lay K Yang 1 collaboration

Ing T Beh 1 collaboration

Jerzy Dziekan 1 collaboration

Yoon P Lim 1 collaboration

Shen K Lim 1 collaboration

Yee W Low 1 collaboration

Yuen I Lam 1 collaboration

Seth Tjia 1 collaboration

Yuguang Mu 1 collaboration

Qiao W Tan 1 collaboration

Przemyslaw Nuc 1 collaboration

Le M Choo 1 collaboration

Gillian Khew 1 collaboration

Loo Shining 1 collaboration

Antony Kam 1 collaboration

James P Tam 1 collaboration

Zbynek Bozdech 1 collaboration

Maximilian Schmidt 1 collaboration

Bjoern Usadel 1 collaboration

Yoganathan Kanagasundaram 1 collaboration

Saleh Alseekh 1 collaboration

Alisdair Fernie 1 collaboration

Hoi Y Li 1 collaboration

Rion Brattig-Correia 1 collaboration

Joana M Almeida 1 collaboration

Margot Julia Wyrwoll 1 collaboration

Daniel Sobral 1 collaboration

Sara Di Persio 1 collaboration

Leonardo Gastón Guilgur 1 collaboration

Hans-Christian Schuppe 1 collaboration

Neide Silva 1 collaboration

Pedro Prudêncio 1 collaboration

Ana Nóvoa 1 collaboration

Ana S Leocádio 1 collaboration

Joana Bom 1 collaboration

Sandra Laurentino 1 collaboration

Moises Mallo 1 collaboration

Sabine Kliesch 1 collaboration

Luis M Rocha 1 collaboration

Frank Tüttelmann 1 collaboration

Paulo Navarro-Costa 1 collaboration

Konstantinos G Alexiou 1 collaboration

Amélie Bardil 1 collaboration

Fabio Barteri 1 collaboration

Raúl Castanera 1 collaboration

Amit Dhingra 1 collaboration

Henri Duval 1 collaboration

Ángel Fernández I Martí 1 collaboration

Beatriz Galán 1 collaboration

José L García 1 collaboration

Werner Howad 1 collaboration

Jordi Morata 1 collaboration

Pere Puigdomènech 1 collaboration

Paolo Ribeca 1 collaboration

María J Rubio Cabetas 1 collaboration

Anna Vlasova 1 collaboration

Michelle Wirthensohn 1 collaboration

Josep M Casacuberta 1 collaboration

Pere Arús 1 collaboration

Jolyn Jia Jia Lim 1 collaboration

Jace Koh 1 collaboration

Jia Rong Moo 1 collaboration

Erielle Marie Fajardo Villanueva 1 collaboration

Dhira Anindya Putri 1 collaboration

Yuen Shan Lim 1 collaboration

Wei Song Seetoh 1 collaboration

Sriya Mulupuri 1 collaboration

Janice Wan Zhen Ng 1 collaboration

Nhi Le Uyen Nguyen 1 collaboration

Rinta Reji 1 collaboration

Herman Foo 1 collaboration

Margaret Xuan Zhao 1 collaboration

Tong Ling Chan 1 collaboration

Edbert Edric Rodrigues 1 collaboration

Ryanjit Singh Kairon 1 collaboration

Ker Min Hee 1 collaboration

Natasha Cassandra Chee 1 collaboration

Ann Don Low 1 collaboration

Zoe Hui Xin Chen 1 collaboration

Shan Chun Lim 1 collaboration

Vanessa Lunardi 1 collaboration

Tuck Choy Fong 1 collaboration

Cherlyn Xin'Er Chua 1 collaboration

Kenny Ting Sween Koh 1 collaboration

Riccardo Delli-Ponti 1 collaboration

Jonathan Wei Xiong Ng 1 collaboration

Brandon S Gaut 1 collaboration

Concepción M Díez 1 collaboration

Ivo G Gut 1 collaboration

Tyler S Alioto 1 collaboration

Qiao Wen Tan 1 collaboration

Eugene Koh 1 collaboration

William Goh 1 collaboration

Erielle Villanueva 1 collaboration